rs31240660 SNP Detail

Summary

• ID
  rs31240660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147332853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCACAT TAGGGGCTGA
  GAGGATAGTT CAGTGGAAGC CAGGCAGGCA TGCTGGCTGC CTGTAACCTG AGCAGCAAGA
  GTGAGAAAGA GGGAATCTCT GGGCAAACTG CTCACCTAGA ATAACTGGAA TAGGCGCTTC
  TGGAATCCAT GAGAAGACCC AACTCACGGG CCTCCGTATG CATCCCCACA CTTAGTTTAC
  Y
  CCTACACGTG GGAACACATG TACATAGACC ACAGGTCCAC ACACAGGCAG AAAGAGAATA
  AGAGAAAGCT CATGACAAGA CAGAGTATTA TTTCCATTGA GTGTATTGAT ATTAATCAAC
  AGCAATTTTA CAAACAAGTT TTAAAACTAA TTTCCCTAGA TAATCAGGCA GTGGTTATGG
  CCTGACATGC AAAGAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47031499	NES10849743	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31240660					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031499	NES10849743	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147332853 () rs orientation: forward

Symbol	Name	Function Class
Gm36888	predicted gene, 36888	within coordinates
Rr587154	regulatory region 587154	1095 bp proximal