rs31240637 SNP Detail

Summary

• ID
  rs31240637
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146887898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTT GTGCAGCTCA CCCTGGACAG
  Y
  TCCACGATTT ATCCGAGAGG CATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45514100	mCV24071909	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss51050464	NES13900891	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	C	C		C	C	T		T
ss136048019	ENSMUSSNP6986033	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss321011553	CHEV_3_146845107	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31240637					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51050464	NES13900891	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146887898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13926	CpG island 13926	within coordinates
Gm65492	predicted gene, 65492	within coordinates
Rr375882	regulatory region 375882	within coordinates
Rr587132	regulatory region 587132	863 bp distal
Rr587133	regulatory region 587133	362 bp distal
Rr587134	regulatory region 587134	452 bp proximal
Rr587135	regulatory region 587135	639 bp proximal
Rr587136	regulatory region 587136	1372 bp proximal