rs31240142 SNP Detail

Summary

• ID
  rs31240142
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69664591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAG CATCCATGGC ACCAACAGGA
  W
  CCAGACTGTG ACGACCCTAG AGAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45513131	mCV24613281	ABI	CRAMUS_MOUSE	f	SNP		T					A		T
ss50978650	NES13928513	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	A	T		A	T	A	T		T	T	A		A
ss135271398	ENSMUSSNP6970065	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss320793825	CHEV_3_69561180	CHEVERUD	SCREENING_POP	f	SNP												T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31240142					SNP	A	T	T	A	A	T	A	A	T	A	T	T	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978650	NES13928513	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69664591 () rs orientation: forward

Symbol	Name	Function Class
9530051E23Rik	RIKEN cDNA 9530051E23 gene	885 bp downstream
Rr375162	regulatory region 375162	919 bp downstream
Rr578222	regulatory region 578222	1794 bp distal
Rr578223	regulatory region 578223	1901 bp distal
Rr578224	regulatory region 578224	368 bp distal
Rr578225	regulatory region 578225	586 bp distal