rs31239770 SNP Detail

Summary

• ID
  rs31239770
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101054850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTAAGAA TGAAAGTTCA
  TAAGCATTAA TTAATTTGCC CAAAGACATA GCTAGTACAT AATAGGGTGA ATAATGGAAT
  GCAGATCTGA TCAAACCTTA CAGATGGTGC TAGTGGTTCA GGTTAGGAGA CAGAGAGAAG
  TATTAAGTGA GTTTTTTAAA TACAGACACT CCATTGTCAG TACATGAAAC CATTTACTGA
  K
  GACCTAGTGA AATTTTCCTG CTGTGTAGAT CAAAGATCTA GATTTCTTAA CAGTCATACA
  TCTGACAGGA GACCTTCCTC TGACTGTCCA TTCTAATGGG TGATTTGCTT GTGGCAGCCC
  GAGTTGCTGA ATCTCTGGAG TGCCTATCCT GGACAGCTAC ATGAAAGAGA AATACTTTTA
  TTTTGTAGAA GAGTAATTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45513023	mCV25367544	ABI	CRAMUS_MOUSE	f	SNP		T	G	T
ss46811687	NES10721876	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T		T	T	T		T
ss135544480	ENSMUSSNP5996633	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G	T
ss320851114	CHEV_3_100951457	CHEVERUD	SCREENING_POP	f	SNP						G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31239770					SNP	T	T	G	T	T	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811687	NES10721876	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101054850 () rs orientation: forward

Symbol	Name	Function Class
Rr581969	regulatory region 581969	805 bp distal