rs31239530 SNP Detail

Summary

• ID
  rs31239530
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79473227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGGCACT CAAATGGCTG
  TAATGTCCTT GGTAAGGGCC ACCAAAGAAG ACACCTGAGG AATCTTGGTC TAGTCTAGGA
  TTCCAAGAAG AATTAACATG TCCTGACTCC AAAGTAATTC TACAACTCAG AGACGTTAGA
  CGACAGCATC ACGGGTAGGC AGACAAATAG AAGGCACAGA ATCAGGTCCA GTCTGCCTAA
  M
  GGAAATGCAC TGACCATGAT CCAGGCAGTC CTCACAATTT ACCTTCCAAC CTCCCACCAC
  ACACACACAC ACACACACAC ACACACACAC AAATGCTGCT ATTCTGTTTA ATGTCTCATT
  CTCTCCAAGT TGGAGCCAGG GATGGCAGCA CGTGCTTACT GTAATCTTAC ACTTGAGAAG
  CACTAACAGG ACGATCAGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47031652	NES10774426	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31239530					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031652	NES10774426	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79473227 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13275	CpG island 13275	1013 bp proximal
Fnip2	folliculin interacting protein 2	Intron
Rr578547	regulatory region 578547	736 bp distal
Rr578548	regulatory region 578548	631 bp proximal
Rr578549	regulatory region 578549	1752 bp proximal
Tssr33722	transcription start site region 33722	1003 bp upstream
Tssr33723	transcription start site region 33723	1438 bp downstream
Tssr33724	transcription start site region 33724	1765 bp downstream
Tssr33725	transcription start site region 33725	1827 bp downstream
Tssr33726	transcription start site region 33726	1851 bp downstream
Tssr33727	transcription start site region 33727	1885 bp downstream