rs31239391 SNP Detail

Summary

• ID
  rs31239391
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:55448702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC AGAGTGAACA CAAGTAAGAC
  R
  CCATAAATAG CTCTATCAGC ACACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45512359	mCV22823978	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss135188633	ENSMUSSNP1020413	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			G
ss320775355	CHEV_3_55345203	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31239391					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55448702 () rs orientation: forward

Symbol	Name	Function Class
Gm31796	predicted gene, 31796	within coordinates
Rr576965	regulatory region 576965	914 bp distal
Rr576966	regulatory region 576966	6 bp distal
Rr576967	regulatory region 576967	443 bp proximal
Rr576968	regulatory region 576968	1260 bp proximal
Tssr33298	transcription start site region 33298	1309 bp upstream