rs31237950 SNP Detail

Summary

• ID
  rs31237950
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126391247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTGTTCG CGTGTCGCCC
  GTCGCACTGT CCAGACCCCG CCATGGCTTC GACCACCACC TGCACCCGGT TCACCGACGA
  GTATCAGCTC TTTGAGGAGC TCGGAAAGTA AGCGTCCCTG CCTGGCATCT CCTCCTCCCC
  ACGACCCCTC GTCTCCCTCG TGGGGATAGA GAGCCTGCGG GCCGAGGCGG GGAGACGGAC
  M
  CTGGCTTGGT GCGGGTGGGG CACACAGGGA AGGAAACCTT TGCCCTACTG TGGCGGGTGC
  TCCGAATTCC CAGCCCATCT TCTCGGGTCC TCCACCTCTC CACGGGGGAC TTAGTGAATT
  TATGATCTCT GCAGTTGTAG CTGTCATCCT GAGAAGTGTG CGCGCACGCG AGTGCGAATG
  TGTGTGTATG TGTGTTCGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45513105	mCV24012045	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
ss135836838	ENSMUSSNP7223323	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss320946582	CHEV_3_126300516	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31237950					SNP	A	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126391247 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			within coordinates
Gm17225	predicted gene 17225			within coordinates
Rr367547	regulatory region 367547			1134 bp downstream
Rr397994	regulatory region 397994			1688 bp upstream
Rr584646	regulatory region 584646			174 bp distal
Rr584647	regulatory region 584647			691 bp distal
Rr584648	regulatory region 584648			579 bp distal
Rr584649	regulatory region 584649			within coordinates
Rr584650	regulatory region 584650			1764 bp proximal
Tssr31566	transcription start site region 31566			1255 bp downstream
Tssr31567	transcription start site region 31567			1226 bp downstream
Tssr31568	transcription start site region 31568			1179 bp downstream
Tssr31569	transcription start site region 31569			744 bp downstream
Tssr31570	transcription start site region 31570			612 bp downstream
Tssr31571	transcription start site region 31571			560 bp downstream
Tssr31572	transcription start site region 31572			485 bp downstream
Tssr31573	transcription start site region 31573			344 bp downstream
Tssr31574	transcription start site region 31574			185 bp downstream
Tssr31575	transcription start site region 31575			163 bp downstream