rs31237783 SNP Detail

Summary

• ID
  rs31237783
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116760366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACC TACTCAATTC CTTTTAAGGC
  M
  TTTTGATCTT CTATATCTAA TTGCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss45513409	mCV23495021	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss135676585	ENSMUSSNP5018000	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320897074	CHEV_3_116669635	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs31237783					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116760366 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			1550 bp upstream
Cpgi13743	CpG island 13743			1876 bp proximal
Gm52613	predicted gene, 52613			477 bp upstream
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583814	regulatory region 583814			82 bp distal
Rr583815	regulatory region 583815			35 bp proximal
Rr583816	regulatory region 583816			69 bp proximal
Rr583817	regulatory region 583817			1460 bp proximal
Tssr35360	transcription start site region 35360			1821 bp downstream
Tssr35361	transcription start site region 35361			1846 bp downstream
Tssr35362	transcription start site region 35362			1911 bp downstream
Tssr35363	transcription start site region 35363			1959 bp downstream
Tssr35364	transcription start site region 35364			1995 bp downstream