rs31236849 SNP Detail

Summary

• ID
  rs31236849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161345723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acaaattaa atttattttt tcacagttct
  aggagtgagc aagtctaaac caaaacatat ttgtctcaat gtgcttccta gatggtcatt
  tctgctgtaa actcatgtgg taaaagtggt aaggtacttg tttgggcctt ttctTGAGAC
  R
  TATAGTTTTG AAATTAAAAT ATAATTATAG AATCTTCCTT CATTCCTTTT GTCCCCCAAG
  CCCATCTACC TTCTCAACCC ACGCCCTTTT TCCCAATTTC ATGGCTTTTA GTTTTTTCTT
  TAGTTGTTAA Taatacaacc tgcttagtcc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45010906	mCV24543274	ABI	CRAMUS_MOUSE	f	SNP	G	G					A		G
ss60336260	NES15835551	PERLEGEN	MM_PANEL2	f	SNP		G	A	G	G	G		G		A	G		G	A	G	G
ss145915601	ENSMUSSNP4787939	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G							G
ss320080969	CHEV_1_163448285	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31236849					SNP	G	G	A	G	G	G	A	G	G	A	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336260	NES15835551	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161345723 () rs orientation: forward

Symbol	Name	Function Class
Gm31815	predicted gene, 31815	within coordinates
Rr421813	regulatory region 421813	463 bp distal