rs31236812 SNP Detail

Summary

• ID
  rs31236812
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125196237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTATGTC TTAGAACTGA
  CTAACATTGT AACACTTCCA TTGTCAAAGT CCTCACAATT AAAAAATGGT TAAGTATCTT
  CATATCAAAG CTGGTGCTAG AGTAATAATG GACTTGATCA TGTTATTTCC TTTGTTATGA
  TTCTACACTG TCCATGGCCA TAACCCTGAC AAGGCTGTGG ATCCTGCTTC AAGGTTCTAT
  K
  TGATAGTTTT GCAGTGAGAA TCATGGAGCT ACCATTTAAT TCCAACAAGT TCAACCGTTT
  GTATATAGCA CTGCTTCTGT TGGCCTTTGA AATAGGAACG CAGCAAGACT GTAATGGGTT
  GAACAATTTG CAATAATGTT TCTTCCTCAA TTATGCAATT TTCCAAAAAC TTAAAATGCT
  AAATAAATAA TGAAATTAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45512993	mCV24033640	ABI	CRAMUS_MOUSE	f	SNP		T	G					T		T
ss61078019	NES16589244	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	G		G	T	T	T		G	T	T	G		T
ss320936156	CHEV_3_125105506	CHEVERUD	SCREENING_POP	f	SNP													T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31236812					SNP	T	T	G	T	G	T	G	T	G	T	T	T	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61078019	NES16589244	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125196237 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	1488 bp upstream
Rr584608	regulatory region 584608	1004 bp proximal
Rr584609	regulatory region 584609	1499 bp proximal
Tssr31558	transcription start site region 31558	1484 bp upstream
Tssr31559	transcription start site region 31559	1737 bp upstream