rs31236800 SNP Detail

Summary

• ID
  rs31236800
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37780195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAT TTTGTTTGGA TTCAGGTGCT
  M
  TGGCTTGCTG GGACTTTTGT GCAAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45513192	mCV24773885	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss134812065	ENSMUSSNP2657040	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320712079	CHEV_3_37624968	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31236800					SNP	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37780195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13102	CpG island 13102	1379 bp distal
Gm5148	predicted gene 5148	1686 bp upstream
Gm36620	predicted gene, 36620	within coordinates
Rr575549	regulatory region 575549	1728 bp distal
Rr575550	regulatory region 575550	1066 bp distal
Rr575551	regulatory region 575551	578 bp proximal
Tssr33056	transcription start site region 33056	1708 bp upstream