rs31236777 SNP Detail

Summary

• ID
  rs31236777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157334174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTTGAGGT GGGGCACTTA CTAAGTTGAT GTCATGATTG
  CTAAGAAAGC CAGTGTGATG ATTAGTGTCT TCAGGACTTT TGATCAGGCA CTCAGAGTTC
  Y
  GTGTGGTTAC TCTCTATACT TTGAAGTAGT GCCCCTTTTA GTGGGACTGT CCCAAAATGG
  TGATCAGATC ATGTTTCCAG CCTCAGGAGC TACTACTAAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	WSB/EiJ
ss49717937	NES13053981	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	WSB/EiJ
rs31236777					SNP	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49717937	NES13053981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157334174 () rs orientation: forward

Symbol	Name	Function Class
Gm15486	predicted gene 15486	within coordinates
Rr421396	regulatory region 421396	339 bp distal
Rr421397	regulatory region 421397	within coordinates
Rr421398	regulatory region 421398	217 bp proximal
Rr421399	regulatory region 421399	1324 bp proximal
Sec16b	SEC16 homolog B, endoplasmic reticulum export factor	129 bp upstream
Tssr9592	transcription start site region 9592	153 bp upstream
Tssr9593	transcription start site region 9593	173 bp upstream