rs31236547 SNP Detail

Summary

• ID
  rs31236547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:45335187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGG GCCAATGCAA AATTAACCTA
  Y
  TCTATCCTAG AGTGCCAGAT CCAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45511380	mCV22838054	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss135075464	ENSMUSSNP331695	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31236547					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:45335187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13124	CpG island 13124	within coordinates
Pcdh10	protocadherin 10	Coding-Synonymous
Rr576054	regulatory region 576054	1938 bp distal
Rr576055	regulatory region 576055	1437 bp distal
Rr576056	regulatory region 576056	440 bp proximal