rs31233938 SNP Detail

Summary

• ID
  rs31233938
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147977662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCAAAC ACAACAGAAA
  GAAAGTCTAT TATGTTTCTC GCCTCTTTAG ATAGCAGATC CAGAGCAATT TCTTCTGAAG
  TGAATGGAAT TTGGTTTGTG TTGGAATAAT CAGGACAATA GCTGGTGTTA ATGAGTCTGC
  AATAATAGGT CATTATTTTC ATTTCCAAAC AGCACTGCAA ATACCTAAGA AAGCTTTTCA
  K
  TCTTCATTCA CTTTAAAAAT ACATCCAACT CTGAATCTTC TTGAGTAAAA TTATTTGCAC
  CCAGTTTTAT CATCATGTGA ACCTTAATGT AAGCCCAGAC TTAAAGGAGG GGGAAGGAGG
  CAGCTTATTG AAAACTTCTT CCATTCACAG TCTTGGCCTG GTCAGGGCAA ACATCGTAGG
  TTCCTTCAAG CATTCATTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45512190	mCV22802066	ABI	CRAMUS_MOUSE	f	SNP		G	T			T		T
ss47037285	NES10848006	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	T		G	T	T	T		G	T	T	G		T
ss136057887	ENSMUSSNP2374301	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T					T
ss321014835	CHEV_3_147934990	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31233938					SNP	G	G	T	G	T	T	G	T	T	T	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47037285	NES10848006	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147977662 () rs orientation: forward

Symbol	Name	Function Class
Rr375892	regulatory region 375892	1937 bp upstream
Rr587183	regulatory region 587183	within coordinates
Rr587184	regulatory region 587184	544 bp proximal