rs31231535 SNP Detail

Summary

• ID
  rs31231535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79400869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCTCTCT CTCACACAGG
  GAAAAGATGA TGCTGATGGC GATCTTCTTC CTTCTAACCA TAGCTGGATT AGAGCTACAC
  GTTTCTTCGG CCAAGCTAAA TGTCTCATCA GTTGACCTGG AGGAAAATTA GGTTTGAAAA
  GCGGCCATGT ATCACTGAGT CGCTGAAGGT AAGCTGTCTT GTCGTGGGGT GACACTCAGA
  R
  TGCTTGTGCA GAATACCGAG AATTCAGCCG GCCAGCCATC TACCTCCAAC TCATTCTCTT
  ACTCCTTTAT CAGGAAAACC AAGAGGATAT GCACTTACCA ACATTACACG TCTTACACAC
  CACCCACCAT CTTACCATCC AAAGCAGCTC AGACGGAAGC CAGTGGCAGC TTAAACGTGT
  GACTCTCACC CTTCTGATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47031068	NES10777249	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31231535					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031068	NES10777249	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79400869 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	Intron
Rr578528	regulatory region 578528	1804 bp proximal