rs31231298 SNP Detail

Summary

• ID
  rs31231298
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:17977153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTAAGTTG TCTCTGCAGG
  AGAAACAGGC TGGTCTGACA AGCCGGCCTC AGGTTCTCAT CTGAACAGTG CTGTTTAGTT
  AGTATTTTTC CTAAGAAAAA CTGGAAACTG GAGACTTCAG TAAAAGGAAT TTCTGTAGGG
  GTTTGCATGC CCCTTTTGCT CCAGCTGCAG GGTATTTCTA CTCCCACTCT GGCCTGTTTT
  M
  TCTCCCAAAA GAAGGACACA GAGACCTGGT GCTTTTATTA ACATGCTGCA AGTGCTAACC
  TTGGTAAATG TTGAGCTATT CTTTTTTAAT ATTAATTTAT TTGTTCACTT TATATCCCAA
  TATCAGCTCC CCTTCTCTCC CCAGCCCTCC CCTCACACAG TTCTTCCCCC CTTCCCCCTC
  CTCTTCTCCT TTGAGAAGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss46010431	mCV25039036	ABI	CRAMUS_MOUSE	f	SNP		A	C					C
ss51883297	NES14902311	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	A		C	C	C	A
ss148438418	ENSMUSSNP2956558	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs31231298					SNP	A	A	C	C	C	A	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51883297	NES14902311	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:17977153 () rs orientation: forward

Symbol	Name	Function Class
Rr642879	regulatory region 642879	919 bp proximal
Tssr64734	transcription start site region 64734	1974 bp upstream