rs31229984 SNP Detail

Summary

• ID
  rs31229984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79383951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCTGGGT CCTAGTATTT
  AAAAGGCAAT GAAAGCCAGG AAAGTAAACA GTAAAAGTTT TGTAAGAGAC TAGGATTTAA
  AAAAAAAAGA ATGAAGATAC TCTTGATGCT GGATGTTCTA GGAAGAAATT TCCTTGTGCT
  CCAAAGAAAA CTAGTCTGCT AAGATTATAC AATGCACATT TATAAAGCCA GATTGTATAA
  Y
  CTAAATCATG CATGAGTCAA AAAAAAAGAT CAATAAGTTA CAACAATTGT TTTTTACAAA
  GTTATTCAAA ATCCTTCTTG AAAAGGAATT ACAAGTCCCA AAGTCTGGCA TGAGACTAGA
  ATTATTATTA TTATTTTTTT AAAGATTTCT TTATTATTAT ATCTAAGTAC ACTGTAGCTG
  TCCAGACACG CAGGAGAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47030810	NES10777773	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31229984					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030810	NES10777773	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79383951 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	Intron
Rr578524	regulatory region 578524	1203 bp distal
Rr578525	regulatory region 578525	323 bp distal
Rr578526	regulatory region 578526	1831 bp proximal