rs31229859 SNP Detail

Summary

• ID
  rs31229859
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151958948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAAGCAT TTCTTTAATC
  TAGGTGGTTG AATAAGTAAA TATGAACACG TTTCAAAATT AGACTAGATT ATACTAGAAT
  AGCCCCTCTG CCCCACACTG CAGAAGAACC CTCTAGGGTC CCGTGGGTTC CTGAAAGCAC
  CGACAATGCT AAGTCCTGTG CATGCTGTTT TTCTTGTATG AAAAATATAT ACATATAAAA
  M
  AATATATATT CGGCACAGTA AGAGACAAAG AACAAATAAT TATAAAAGGA TAGTTATAAA
  AGTATACTGT AATGGAATGC ATGTAAAGCT TCAGTTTGCC TCTGGGCTGG ATGGTTTGGA
  CCATGGTTGA CTGCAGGCAG CGTAGGCAGC GAGGGACCGC AGACAGGGAC AGGGGAGCAC
  ACGGAAGTCA GCTCACAGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45511403	mCV23509187	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
ss136101466	ENSMUSSNP4660937	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
ss321028505	CHEV_3_151916275	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31229859					SNP	A	C	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151958948 () rs orientation: forward

Symbol	Name	Function Class
Gm43185	predicted gene 43185	508 bp upstream
Nexn	nexilin	Intron
Tssr1100	transcription start site region 1100	398 bp downstream
Tssr32404	transcription start site region 32404	297 bp upstream
Tssr36193	transcription start site region 36193	462 bp upstream
Tssr36194	transcription start site region 36194	348 bp upstream
Tssr36195	transcription start site region 36195	235 bp upstream
Tssr36196	transcription start site region 36196	208 bp upstream
Tssr36197	transcription start site region 36197	177 bp upstream
Tssr36198	transcription start site region 36198	369 bp downstream
Tssr36199	transcription start site region 36199	384 bp downstream
Tssr36200	transcription start site region 36200	408 bp downstream
Tssr36201	transcription start site region 36201	444 bp downstream
Tssr36202	transcription start site region 36202	490 bp downstream