rs31229706 SNP Detail

Summary

• ID
  rs31229706
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87661883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCA GTTTGGGGGC TGCAGACTCC
  R
  TCGTGGGCAC ACTGGCAACT GGCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45511134	mCV25326270	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss135468083	ENSMUSSNP4899937	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A				G
ss320835360	CHEV_3_87558498	CHEVERUD	SCREENING_POP	f	SNP						A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31229706					SNP	A	A	A	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87661883 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13335	CpG island 13335			1287 bp proximal
Pear1	platelet endothelial aggregation receptor 1			Coding-Synonymous
				Intron
				mRNA-UTR
Rr579538	regulatory region 579538			1544 bp proximal
Tssr33951	transcription start site region 33951			1317 bp upstream