rs31229189 SNP Detail

Summary

• ID
  rs31229189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79383644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCTGCTG GTGTTGGTCT
  ATTGCCCTCC TCTGCCTTCA TTTTGGTCAC CAACAGTGCC TAGTTGGCAG CACTCATTGG
  CAGATGGGAC AGAGAAGACA GACAAGGCTG CTGGAGGGCC ACAGGGTGAA GTATTGCTGG
  CTCATGCCTG TGTCCGTCCC CTTGCACTCA GTGAAGAGGA AGGTGAAGGA AAGTATATGT
  Y
  TAATTGATAG CAAAGTTACC TTAAACTGTT AGCAGCTGGG TAACATGCAT CAGGAGGAAA
  GAATTCAAAT GTCAGACTGA AAAACAGCAT GTGTCACACA CCGAGAAAAC CTGGGTCCTA
  GTATTTAAAA GGCAATGAAA GCCAGGAAAG TAAACAGTAA AAGTTTTGTA AGAGACTAGG
  ATTTAAAAAA AAAAGAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47030804	NES10777767	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31229189					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030804	NES10777767	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79383644 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	Intron
Rr578524	regulatory region 578524	896 bp distal
Rr578525	regulatory region 578525	16 bp distal