rs31228707 SNP Detail

Summary

• ID
  rs31228707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151766293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGAAAGCC GCGCACATAC TGCTGAACCT TTACAACTCT
  ACAACGTGGG GAAGGCGAGC CGTGCGTAAC CCAGCTACAC ATCTCTCCAG CAGGCCCACT
  Y
  CGCCCACTGG CCGCTAGACC AACTGCCATA GCACACAGCC ACACTAAAAG CTCTCCAAAT
  AACCTCTGTC CATTCTTCAA CATTTGTTTC CTGGTTTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45170575	mCV23125088	ABI	CRAMUS_MOUSE	f	SNP	C	C	C						T
ss49717414	NES13067475	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	C	C	C	C	C	C	C
ss145723816	ENSMUSSNP7073283	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31228707					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49717414	NES13067475	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151766293 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700025G04Rik	RIKEN cDNA 1700025G04 gene			Intron
				mRNA-UTR
D1Mit513	DNA Segment, Chr 1, Massachusetts Institute of Technology 513			1284 bp proximal
Rr420379	regulatory region 420379			within coordinates
Rr420380	regulatory region 420380			621 bp proximal