rs31228461 SNP Detail

Summary

• ID
  rs31228461
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79382945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAGTAAT TCTGTTTTAA
  CACAGCGATG GCTACCTGTT AATAACATCT CGCACTACTT TTTCCATTTA CAAGACTTTT
  TCACATTTCA TGTTTAAATG GTCAACAGTT ACCAGGTGCT TAGTAGTGTA CACCAGGCAC
  CGTGCTCAAC ACTTGATGTG GACTACAGGA CTTTCAAACT TAAATGACAT CAGTACGCTT
  K
  ATTTTATAGG ATGAACACTT CCCCCAAAGG CCACAACGAC ATTAGGAGCT GAGCGATGGT
  TCAGACCTAG GAGGCCGCTT TGGAGGCCCA GCTTTGCAAA CGTAGGCCAG AGGTCAAACT
  CAGGTGCTGT TCTGTGGGTG CATCCATCTT GTGTCTCAAG ACATGTTCTC TCATGAGGAC
  CTCACTGAGG AGGCTGGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47030796	NES10777784	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31228461					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030796	NES10777784	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79382945 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	Intron
Rr578524	regulatory region 578524	197 bp distal
Rr578525	regulatory region 578525	394 bp proximal