rs31228457 SNP Detail

Summary

• ID
  rs31228457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79382932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGTTGAG GATACCAAGT
  AATTCTGTTT TAACACAGCG ATGGCTACCT GTTAATAACA TCTCGCACTA CTTTTTCCAT
  TTACAAGACT TTTTCACATT TCATGTTTAA ATGGTCAACA GTTACCAGGT GCTTAGTAGT
  GTACACCAGG CACCGTGCTC AACACTTGAT GTGGACTACA GGACTTTCAA ACTTAAATGA
  Y
  ATCAGTACGC TTTATTTTAT AGGATGAACA CTTCCCCCAA AGGCCACAAC GACATTAGGA
  GCTGAGCGAT GGTTCAGACC TAGGAGGCCG CTTTGGAGGC CCAGCTTTGC AAACGTAGGC
  CAGAGGTCAA ACTCAGGTGC TGTTCTGTGG GTGCATCCAT CTTGTGTCTC AAGACATGTT
  CTCTCATGAG GACCTCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47030792	NES10777782	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31228457					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030792	NES10777782	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79382932 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	Intron
Rr578524	regulatory region 578524	184 bp distal
Rr578525	regulatory region 578525	407 bp proximal