rs31226480 SNP Detail

Summary

• ID
  rs31226480
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79381700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCGTCAC GTCATACACA
  TCACTCTTCC TCTTCAGGAC TCGAAAGAAA GATTCTGCAC ATTTCTCTTT ACCCTAGAAG
  AAGGCATATT CCCACGAGCG TTTCCGCTCC AGTAAGAAAC ATACAATGCT CTAAACTCGG
  TTTTATGAAG TTATCTAACA AGAACAAGCA CTGTTCATGC ACCAGACGAC ACACTAAGAA
  W
  ACAAAGAACC CAAGTCTGTT TCTGCTTCAC GGTAACTGCA GGCCTATGGG AAGAAGAGAC
  ACATGGCGGT AGACATGTGA ACATGTGTAC ATACATGTAT GAAGGCATGT ACATATATAC
  TCACAATGTG CAAAGGTCTC ACTAAATAAT AATCCTGACC ATCTGTAAGG ATATCTATCC
  TCTTTATTAC TAAAAGATGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47030772	NES10777876	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31226480					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030772	NES10777876	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79381700 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	Intron
Rr578523	regulatory region 578523	1684 bp distal
Rr578524	regulatory region 578524	282 bp proximal
Rr578525	regulatory region 578525	1639 bp proximal