rs31223752 SNP Detail

Summary

• ID
  rs31223752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152062179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTAGGTT TCTGTGTGTG
  CTGGTGAAGG AGAAACAGTC GCCACTCTTA CCCAGCTGTG AACTGTGCAA GCGACCTTAA
  CAGCTGTCCT GGCAGGACAT GCCCACTGGT GAAGCTGCAG TGTGTGCGCA TACCAACCAC
  TTTCTGACTA CTTGATTTAA GGATTGTCCC ACAAGATAAA CTCATATTTG GTACCATTGC
  Y
  GGGACAAATA ACCTCTTGCT AGATAGGTCA TAGACTGGGA GGGAGAACCT GCCATCTGCT
  AAAGGACATA GTCTTAAACT GACTCGTAAT AACTAAAGTG TTACACCCAT AGATTGATAT
  ACCTCTTTTT TTGTTTGTTT GGTTGGTTGG TTTTGAGATA AAGATTCTTT GTGTAGCCCT
  GGTGGTCCTG TAATTCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45510777	mCV25311381	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss136102680	ENSMUSSNP2209667	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321028745	CHEV_3_152019506	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31223752					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152062179 () rs orientation: forward

Symbol	Name	Function Class
Rr587538	regulatory region 587538	526 bp distal
Rr587539	regulatory region 587539	291 bp proximal
Usp33	ubiquitin specific peptidase 33	Intron