rs31220054 SNP Detail

Summary

• ID
  rs31220054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153513998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGC CCACCCGCTG CATTGTCCCC
  Y
  GAAACATTAG CTATCTGAGT TTGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45510528	mCV24023695	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss136113477	ENSMUSSNP6121260	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss321031414	CHEV_3_153471325	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31220054					SNP	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153513998 () rs orientation: forward

Symbol	Name	Function Class
Rr587763	regulatory region 587763	1034 bp distal
Rr587764	regulatory region 587764	1792 bp distal
Rr587765	regulatory region 587765	within coordinates