rs31219947 SNP Detail

Summary

• ID
  rs31219947
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79288158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCCTGAA GACACTGCAC
  CCTGTGCTAT CTCCCTGGCC CTGCATGATT ATACTTCAGC CCACAGGGTG GACCAAGCAT
  GACAGAACAT ATCTGTAACC CTAGTGCTTG GGATGCTGAG GCAGAAGAAT AACAGTTTAA
  AGATGTCCTA GACTATATAG CTGACCCTGG GTCATTAAAT AAAAAAGGGA ATGACAACAT
  W
  GTACGAAGCC TGAGAATCAT ATTATATGTA TCCTGTGGGC CTTCCAATAC ATGAAAAGCA
  AGGGTGGGGT GTGAGGGAAG AGAGAGGGGA ATGAAAGAGA CAGAGACACA GAGAAACAGA
  ATCAGAGAGG GGAGGAGAGG GGGAGAAAAA GAGACAGGAG GAGAAAAGAG ATCGGGAAAC
  AGGAGGAGTT CTCACTAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47029891	NES10780990	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31219947					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029891	NES10780990	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79288158 () rs orientation: forward

Symbol	Name	Function Class
Rr578509	regulatory region 578509	1132 bp distal
Rr578510	regulatory region 578510	342 bp distal
Rr578511	regulatory region 578511	587 bp proximal
Spmip2	sperm microtubule inner protein 2	Intron