rs31219641 SNP Detail

Summary

• ID
  rs31219641
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79268437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAAGAG CTCAGATTTC
  CGAAACGGGA TTCACAGCGA AAGTGCATAC ACAATAATGA GCCGAGATGC CAGATTGGTG
  AAGCTGCATT CTATTTGTTG ATATTTAATT TATTTTATAC TGCACTCATC CTGTTGGCGT
  AGTGTGTAAT TTGCCTTGAT TCGTTTGTGT TGTTGCTGGA ATCTGTGAAC AGTGTTCAAC
  K
  TCTTACCATA AATCTCTGAC CAGGGACAAC TAAATAAAAT AAAAATAGAG ACTTACAAGG
  CTGGGGCTGT AGCTCAGAGG TAGGACACTT GCCTAGCACG ATCAATAATC TGAGATCCAA
  CCCAGAAACA GAAGGAGGAG GAAAAGCAGG AGGCCGAGGA GGAGGAGACA AAATATTAAC
  AACTTAGTTG GAAATTATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47029785	NES10781530	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31219641					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029785	NES10781530	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79268437 () rs orientation: forward

Symbol	Name	Function Class
Rr578507	regulatory region 578507	104 bp distal
Spmip2	sperm microtubule inner protein 2	Intron