rs31219225 SNP Detail

Summary

• ID
  rs31219225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79287118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGAGCT GGTGGTGCTT
  CCTTCAGCCC TCGAGCTGAC GCAGCCACAC AACCACACAG CTCACAGGTG GACTCACAAG
  TAGGTGAATT CACAGCGTGA AACTCAGCGA GCGCTCTGAG CTAAGCAAGA TGTCTTCTGA
  AAGCATTCCT TCTATCATTA ACATTTTGGT ATGTTTAAGA AACCATGTGA GAAAGATGTT
  Y
  GATAAACAAA GCGCCTCAGG GAAAATTGCA AAACAAATTT TCTAACACTG GTTTTTGGTA
  CAGTATGAAT CTCAGAATCC AATTAATTAA AAAACATACT AAAGTCTCTA AATTGAGCTA
  CTCTTAAGTT CCCATTTCTA CATGCACCAA AGCGTAGGGA TCTATATTCC AAATTCTTGG
  TTCCTCTTTG GCATTCCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47029879	NES10781050	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C		T	T	C	T
ss135371735	ENSMUSSNP3526754	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31219225					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029879	NES10781050	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79287118 () rs orientation: forward

Symbol	Name	Function Class
Rr578508	regulatory region 578508	1383 bp distal
Rr578509	regulatory region 578509	92 bp distal
Rr578510	regulatory region 578510	158 bp proximal
Rr578511	regulatory region 578511	1627 bp proximal
Spmip2	sperm microtubule inner protein 2	Intron