rs31218449 SNP Detail

Summary

• ID
  rs31218449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79286855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCATCC AGGCTAGCTG
  GCCCAAGATC ATCCGGGGAT TATCTTGTCT CTGCCTGTCA TCTCGCCACT AGAGTGCTGT
  GCTTACAGAC ACAGGAACTA CGTCTGGCTT TATGTGTCTC TGGGAGATCT GAACTTAAAT
  GCTTGCATCT GCGTGAGTGC GTACTCACTG AGCAGTCTCC CCAGTCCTGG AACACACTTT
  Y
  TAGTCTCGTC TCACTCGGTC CAGCTATGAC CTCACCTGTG CTCCCCGGAC TGAATTGTGG
  GATGTGGGAG CTGGTGGTGC TTCCTTCAGC CCTCGAGCTG ACGCAGCCAC ACAACCACAC
  AGCTCACAGG TGGACTCACA AGTAGGTGAA TTCACAGCGT GAAACTCAGC GAGCGCTCTG
  AGCTAAGCAA GATGTCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47029873	NES10781047	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31218449					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029873	NES10781047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79286855 () rs orientation: forward

Symbol	Name	Function Class
Rr578508	regulatory region 578508	1120 bp distal
Rr578509	regulatory region 578509	within coordinates
Rr578510	regulatory region 578510	421 bp proximal
Rr578511	regulatory region 578511	1890 bp proximal
Spmip2	sperm microtubule inner protein 2	Intron