rs31217622 SNP Detail

Summary

• ID
  rs31217622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79267428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATGTGGA ATTCATTATG
  TACTCTAGGC TGGTCTGACT TTGCAAACTT CCTGTGCTCC ATCACGGACT GACACTTTCT
  GCCTCAGCCT CCCATGCTAG GATCACAGAC ATGTCTGTCC CATTGTGCCT AATTTACAAA
  TACATTTTTT ACAAGATTTT TTTTTCTCAT GAATTTCCAC TTGACCCAAA ATAAAGCTAG
  R
  TGTTAAACAG TGAATATGAG ACACTGGAAA GGCCCATAAG CGTATGCTGG GGTTGTACCT
  GTAGTCTCAA CCACACCACA GACTGCAGAA ACACAGACAG GAAGATTGCT TAAGCCAGGG
  TTTAAATACA GCCTAAGCAA CAGGGAAAGG CCTATTCAGA AAGATTAATT AATAATTAAG
  TAAATACGGA AGCACAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47029765	NES10781565	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31217622					SNP	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029765	NES10781565	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79267428 () rs orientation: forward

Symbol	Name	Function Class
Rr578507	regulatory region 578507	615 bp proximal
Spmip2	sperm microtubule inner protein 2	Intron