rs31217620 SNP Detail

Summary

• ID
  rs31217620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79267423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATT TCCACTTGAC CCAAAATAAA
  R
  CTAGATGTTA AACAGTGAAT ATGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45522123	mCV24556206	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		G
ss47029763	NES10781563	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	A	A		G	G	A		G		A	A	G		G
ss135371558	ENSMUSSNP3831687	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G				G
ss320811340	CHEV_3_79164038	CHEVERUD	SCREENING_POP	f	SNP												G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31217620					SNP	A	A	A	G	G	A	A	G	G	G	A	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029763	NES10781563	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79267423 () rs orientation: forward

Symbol	Name	Function Class
Rr578507	regulatory region 578507	620 bp proximal
Spmip2	sperm microtubule inner protein 2	Intron