rs31217610 SNP Detail

Summary

• ID
  rs31217610
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79285498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATTCTGA TGGATCCACT
  TTTGCAAGTG ACTTGGTGTT TCTAGCCTGC TGCTTTCAGT ACGCTTTCTT TGTTTAAAAT
  TATTCCAGGG TCTGGGGACA CAGCTCCGTG GCAGAGCCCT TACCTAAAAC ACATAAGACC
  AGGGATTCTG CCTCCAGCTC TGAAACAGTT CGGGAGCTTA GGGTATTAGG AATAAGCTCT
  W
  TATGTTCCCT GAATGGGATG TCTGTTGAGA GAGCAACCAC TAGTGCTTGA TAGTGTCACT
  ATGCAAATGT CAGACTAGCC CATGAATGAC AGTGGCCCTT TTGACTTCAA TAACTGTTGG
  AGGATAAACA ACCACAGACC GTAAGGCATT GGCTCAGATT TTAGTTAATG ATTGAGGATA
  GGAGGGAAAC AAGGTGGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47029863	NES10781128	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31217610					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029863	NES10781128	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79285498 () rs orientation: forward

Symbol	Name	Function Class
Rr578508	regulatory region 578508	7 bp proximal
Rr578509	regulatory region 578509	1305 bp proximal
Rr578510	regulatory region 578510	1778 bp proximal
Spmip2	sperm microtubule inner protein 2	Intron