rs31212679 SNP Detail

Summary

• ID
  rs31212679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:110675001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGTGGCT GCTGCCCCAT
  CGGTGCCCGC CAGCTGGCAG TTCATCCAGG TGAGGCCCTT GCGGGCGTAG ACTCTTTCTC
  TGGTTTTGCA AGTGTCGGTG GAATTGATGC GCAACGCCGC ATACAGGTAA AAGCCAATGG
  CGACGCAGTA GCCCACCGCG GCCAGGAGGC TGAAGGCGGC CTCCAGCAGC AGCCATCTCC
  Y
  GGGCAGCTTC CTTAGACTCT TAGCTCCCTG CAGTAAAACG CCCATAGTGA GGACGCCCAG
  CCCCAGGGAG ACAGCCACGC CGCCGTAGAT CAGGGGCGAC CGCAGGATCG TGTACTGCTG
  GTCCAGCTGC CGAACCTGCT CCAACTCGGT GCCCTCAAAA GGTGAGTAAT AGTTATTTCC
  GAAGCCGCTG CCGCTGGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47528605	NES11188482	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31212679					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47528605	NES11188482	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110675001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21023	CpG island 21023	within coordinates
Marveld3	MARVEL (membrane-associating) domain containing 3	Coding-NonSynonymous
Rr669767	regulatory region 669767	1735 bp distal
Rr669768	regulatory region 669768	810 bp distal