rs31212496 SNP Detail

Summary

• ID
  rs31212496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78866454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGGCAAT TCAGACATTG
  CTGAGGCAGG GCAATGTCTC CTGTTGAACA CTAGAGGGTA GTCTTTACCT TTCTGTGCAA
  AGTGCTTAGC CAGCAACCAT GGATTTTCAA ACCTGACATC ACAGAGAAAC ACCATGCACA
  TGCATGCCAA ATCTACATCA CTTACACAAC AATTCTACAC AACTAACATA TATTTATATG
  Y
  ATCTGTGTGC AAGAAACAAA CAATACCCAT TAATACAAGC AAGCACAGAG ATGTACAAAC
  ACACACATAG CCAAAGACAT AAAAGTAAAC ACATTCTACA GACACTTAAC TCACATCTGT
  ACTCTGGGAT GCTGTTTTTT ACAACAAGGG ACTGGAAGTC TGAGAGCTCA TATATTCTGC
  ATCATAATAG ATCATAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47028403	NES10759339	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31212496					SNP	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47028403	NES10759339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78866454 () rs orientation: forward

Symbol	Name	Function Class
Gm65474	predicted gene, 65474	within coordinates
Rr578449	regulatory region 578449	478 bp distal
Rr578450	regulatory region 578450	within coordinates
Rr578451	regulatory region 578451	136 bp distal