rs31211540 SNP Detail

Summary

• ID
  rs31211540
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78866263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTTGTT TGTTTTGTTA
  TCATTACTTG TACTCCACAC CATCAAACAG CTTCCTGTTC ATTGAGCCTT CGCTGTTTCA
  CAAATACTAA ACTCCAGAAA CCAATGTCCT CTTGTGCATC TCAAGAACAG GCCTGGACAC
  ATGGTCTTGT AGATGGGGGG AACAACCCAG CATCCCTGGA GTCAACTTTA TTTAAGGCAA
  K
  TCAGACATTG CTGAGGCAGG GCAATGTCTC CTGTTGAACA CTAGAGGGTA GTCTTTACCT
  TTCTGTGCAA AGTGCTTAGC CAGCAACCAT GGATTTTCAA ACCTGACATC ACAGAGAAAC
  ACCATGCACA TGCATGCCAA ATCTACATCA CTTACACAAC AATTCTACAC AACTAACATA
  TATTTATATG TATCTGTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47028397	NES10759332	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31211540					SNP	T	T	T	T	T	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47028397	NES10759332	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78866263 () rs orientation: forward

Symbol	Name	Function Class
Gm65474	predicted gene, 65474	within coordinates
Rr578449	regulatory region 578449	287 bp distal
Rr578450	regulatory region 578450	within coordinates
Rr578451	regulatory region 578451	34 bp proximal