rs31207637 SNP Detail

Summary

• ID
  rs31207637
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27209949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATGGGAA GTGCTGTTTT
  TTTCTTTTTT GAGGAAATGC TGACAGGAAG CATTTTAGAT AATTGTGTGA GAGATGATTG
  CTGCCAATCT GTACCAAGCA GGGTGCAGAT CCTGGTGAAA TAAGGCACAG TCCTCTATCT
  TTGAATCCCT ACTCCGGAGT GTGTATGTGG GGGGAGTTAC TTGGAGGTCA AAAGAAAAGA
  R
  TCTGTTCTTT CCTTCCACTG TGGGTTTGAG GAATCTGGCT CAGGTCATCA GGTTGTATTG
  CAAGAGCTTT TATACACTAG GTCCTCTCAC TGGTACGTTA ATGGGGGGGG GGGGGAGTTG
  GGAAGGGTTA AGGGGTTTCT CGCCAGTTAA GAGCTCTTGT GGCTCTTGCA GAGGACCTGG
  CTTTGGTTTC GAGTATCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45510456	mCV24689742	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss134702355	ENSMUSSNP1987446	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31207637					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27209949 () rs orientation: forward

Symbol	Name	Function Class
1700125G22Rik	RIKEN cDNA 1700125G22 gene	within coordinates
Cpgi13018	CpG island 13018	1593 bp distal
Ect2	ect2 oncogene	1978 bp upstream
Rr374716	regulatory region 374716	within coordinates
Rr574352	regulatory region 574352	1957 bp distal
Rr574353	regulatory region 574353	1759 bp distal
Rr574354	regulatory region 574354	938 bp proximal
Tssr28601	transcription start site region 28601	1769 bp downstream
Tssr28602	transcription start site region 28602	1740 bp downstream
Tssr32836	transcription start site region 32836	1958 bp upstream
Tssr32837	transcription start site region 32837	1945 bp upstream
Tssr32838	transcription start site region 32838	1924 bp upstream