rs31203089 SNP Detail

Summary

• ID
  rs31203089
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146079941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGTCATC TGTTGAAAAC
  AGAAGCCAGC GTGGACGTGG CATGGAACTA GTTGGAAAAT TTAGAAATAA ATTGATTTGT
  TGCAGTTAAC CATTGGATGG ACCTGTCTCC ATCAGGAGGT CAGTGCTTAC TGGTGTGGCT
  GTGTCACTGC TCCCCATCAC TTCCACAGAG AAGTAGTTCA TGGCCCTTCT TCATTTACAT
  K
  TGTGTTGGCT CAACACCACA GCTCTCAACG GAAATAATAT TCTGAAGCCA TTTTGAGTGA
  CCATGGCCAG GGAACACAGA TACAGGCTGC TTCATATTCC ATGTTCTAAC ATAGATTCAG
  GTTCACGAAG TTTCATAGTT TTCCAGGACA AAGAAAGTCA TAAATGGAGG CAAGTTTACG
  TCACACTGGT GTGTGCATCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47026896	NES10844408	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31203089					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026896	NES10844408	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146079941 () rs orientation: forward

Symbol	Name	Function Class
Gm10636	predicted gene 10636	within coordinates
Rr587014	regulatory region 587014	954 bp proximal
Rr587015	regulatory region 587015	1766 bp proximal
Rr587016	regulatory region 587016	1828 bp proximal