rs31203085 SNP Detail

Summary

• ID
  rs31203085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146079789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCACACCA CCTCTTCAGC
  GAAACCTAGA AACAGTAGGA GAGAACTTCC AAATGATAAT TTAAATCCAG GAGAACCATT
  CCATGCAAAA CTCTAATTTC TAATCAAAAG CAAAGAAGAA ACCTGAGGAA ATCCACCTCA
  CTCCAAGGAA GGAATAGTCA TCTGTTGAAA ACAGAAGCCA GCGTGGACGT GGCATGGAAC
  Y
  AGTTGGAAAA TTTAGAAATA AATTGATTTG TTGCAGTTAA CCATTGGATG GACCTGTCTC
  CATCAGGAGG TCAGTGCTTA CTGGTGTGGC TGTGTCACTG CTCCCCATCA CTTCCACAGA
  GAAGTAGTTC ATGGCCCTTC TTCATTTACA TTTGTGTTGG CTCAACACCA CAGCTCTCAA
  CGGAAATAAT ATTCTGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47026890	NES10844405	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31203085					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026890	NES10844405	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146079789 () rs orientation: forward

Symbol	Name	Function Class
Gm10636	predicted gene 10636	within coordinates
Rr587014	regulatory region 587014	1106 bp proximal
Rr587015	regulatory region 587015	1918 bp proximal
Rr587016	regulatory region 587016	1980 bp proximal