rs31201353 SNP Detail

Summary

• ID
  rs31201353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146129874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAGCTGG AGCCTAAAGG
  TGCTGACAGC TGAGCCCAGG TCCGCTGCAA GAGCCGCATG CACTTCTCAG CACCGAGCGA
  GCCATCTTCC CAGCCCCGGG AGTCTATTTC TTAAAAAGCC CCTAAACAGA TACAGTTTAT
  TTTAACCCTA TTTAATTAGT GTTTAATAAT GGGCAATGAA TCTCTAACCA ATCATACGTA
  Y
  GCATATAACA TAATAATATA TTGTATATAA TATAACATGT TATATTACAT TATAGGTTTA
  TACCATATAC TATACTATAT ATTATAGTAC ATTATATAAT ATATAATGTA AAAATTTATA
  AATAATATAT AGTATGTTAT TATAAAAATA TTACTATAAT ATATTGTATC ATATATATGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
ss47027170	NES10841941	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C		C
ss321010312	CHEV_3_146087083	CHEVERUD	SCREENING_POP	f	SNP								T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
rs31201353					SNP	C	C	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027170	NES10841941	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146129874 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	205 bp distal
Ssx2ip	SSX family member 2 interacting protein	Intron