rs31201351 SNP Detail

Summary

• ID
  rs31201351
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146129555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCTTAGA CGGCTGGCTT
  CTGGCTTAGT GCACTGTAGG ACAAGGAATT ACAGAGCTAG TGCTCTGAAG GCATTGCTTT
  ATCATGCGTC TGAGGATAAA CAGTTGGGTT TCCATTCATC TGTCCATAAG ATAGCTATAG
  AAATATTATT TTCAGTGTTT AGTTCTTTTA ACTAAGAAGC CTGGAAGGAA GTCTGCTTCT
  R
  TTTTATTATG CATTTTATGC TTCACTTGAT TATTTTATGG GCGGGTGTTT TGCCTCCATG
  TCTGTGCACC ATGTCCATGG TTGGTACCTG TGGAGGCCAG GAGAGGGCGC TGGCTCCCAT
  GGAGCTGGAG CCTAAAGGTG CTGACAGCTG AGCCCAGGTC CGCTGCAAGA GCCGCATGCA
  CTTCTCAGCA CCGAGCGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47027168	NES10842012	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	A	G	G	G		A	A
ss321010304	CHEV_3_146086764	CHEVERUD	SCREENING_POP	f	SNP									A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs31201351					SNP	G	A	G	G	A	G	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027168	NES10842012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146129555 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	93 bp proximal
Ssx2ip	SSX family member 2 interacting protein	Intron