rs31201346 SNP Detail

Summary

• ID
  rs31201346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146129292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAGGGCT CGCTCAGCAG
  TGGAAGCGTG CTCATCTCCC TCTGGCTCCT GCCTGCCTAG GGACCAGTGC TCTCTGCACT
  GAAGCATCTC CCCCTTGACC CCTGGCATGA TGCTAAGTGT TGCCGTCTTT CATCTAGAGA
  AAGAATTAAC CCCATAAAAT GGCCACAGTA CAGAGAACTT GCCTAGGGTG TACAACACTG
  Y
  AGCATTTCAC ATTAAAAATT CACTTCTAGT TCAAAGTCAG CACTGTGATT TTTAATTTAA
  TGGATGCTTA GACGGCTGGC TTCTGGCTTA GTGCACTGTA GGACAAGGAA TTACAGAGCT
  AGTGCTCTGA AGGCATTGCT TTATCATGCG TCTGAGGATA AACAGTTGGG TTTCCATTCA
  TCTGTCCATA AGATAGCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47027162	NES10842003	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	C	C	C		T	T
ss321010300	CHEV_3_146086501	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs31201346					SNP	C	T	C	C	T	C	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027162	NES10842003	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146129292 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	356 bp proximal
Ssx2ip	SSX family member 2 interacting protein	Intron