rs31201213 SNP Detail

Summary

• ID
  rs31201213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:65693332 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCAT GGGTCATTCC TGGCAGTAGC
  R
  GTGGTCTCCT AGCTTTGGGA TTCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38376613	NES09706090	PERLEGEN	MM_PANEL2	r	SNP	T	C	T	C	T	C		C	T	T	T		C	T	C	C		C
ss46496096	mCV25258436	ABI	CRAMUS_MOUSE	f	SNP		G					A		A
ss134191696	ENSMUSSNP3489938	ENSEMBL	ENSEMBL_Sanger	r	SNP		C							T
ss325892631	CHEV_X_63902901	CHEVERUD	SCREENING_POP	r	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31201213					SNP	A	G	A	G	A	G	A	G	A	A	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38376613	NES09706090	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65693332 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm61789	predicted gene, 61789			246 bp upstream
Rr691649	regulatory region 691649			398 bp distal
Rr691650	regulatory region 691650			257 bp distal
Rr691651	regulatory region 691651			11 bp distal
Slitrk2	SLIT and NTRK-like family, member 2			Intron
				mRNA-UTR
Tssr161127	transcription start site region 161127			332 bp downstream
Tssr161128	transcription start site region 161128			279 bp downstream