rs31200528 SNP Detail

Summary

• ID
  rs31200528
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146558075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCTTAGCG CTCAGGCCTA GTTGTGGGTA GAGGACCCTT
  CTTTTCCTTG GTTTCTTCTG CCCGTCTCCA GCCCTCTCGA GGTCCTGGTG CTTGTACCTC
  Y
  ATGCACGATG CGCACCCCTG GGCGCAGTGG GCAAATGGTC TGGCCCATCG GTAGCTACCA
  CCCCCTTGGG CACGACAGCT GCTCCAGCTG CTCCTGGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45510349	mCV23122953	ABI	CRAMUS_MOUSE	f	SNP	C	C					C		T
ss61097597	NES16606923	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C		C	T	C	C		C	T	C	C		C
ss321011186	CHEV_3_146515284	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31200528					SNP	C	C	T	C	C	C	C	C	T	C	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097597	NES16606923	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146558075 () rs orientation: forward

Symbol	Name	Function Class
Gm65628	predicted gene, 65628	within coordinates
Rr587096	regulatory region 587096	within coordinates
Rr587097	regulatory region 587097	58 bp proximal
Rr587098	regulatory region 587098	336 bp proximal
Tssr32369	transcription start site region 32369	39 bp upstream
Ttll7	tubulin tyrosine ligase-like family, member 7	mRNA-UTR