rs31200123 SNP Detail

Summary

• ID
  rs31200123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146128975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGTGTCT GAGGTCAGCT
  CTTGGTTTTT GAAATTTGAC ATGTGACATG ATGGTCAATT TGCTTTTAAA CAGAACTGTC
  GATGCATCCT GTGTGACACT GGCATGGTGG GTGGGCAGTC CTGTGCCCGT CTTCTGCCCC
  TACCCCAAGA CTGTTCATTT TCTTAGTAAT ACCTGCCAAC AGGTAGTGTC CCTTGTACTG
  Y
  CTGTCCTTCC TGTACTGAGA ACCACGCCCT TTCTCTCCAG TATCCTTTTG TGTCTACCGA
  GTTGTCGCAG GTGCCAGGCT CCATGCCTCA CCCCTCTGCC TCTGCCACCT CATTTCAGCA
  AGGGCTCGCT CAGCAGTGGA AGCGTGCTCA TCTCCCTCTG GCTCCTGCCT GCCTAGGGAC
  CAGTGCTCTC TGCACTGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45515688	mCV23229525	ABI	CRAMUS_MOUSE	f	SNP		T			C		C
ss47027158	NES10841997	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C		T	C	C	C		T	T
ss136044165	ENSMUSSNP6385346	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
ss321010295	CHEV_3_146086184	CHEVERUD	SCREENING_POP	f	SNP										T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs31200123					SNP	C	T	C	C	C	T	C	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027158	NES10841997	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146128975 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	673 bp proximal
Ssx2ip	SSX family member 2 interacting protein	Intron