rs31200122 SNP Detail

Summary

• ID
  rs31200122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146128484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCATTT ATCGCTCCCT
  AAAGCCCCAC ATCCCCCAGA GGATGATGGT ATTATTACAG ATGAGCATGT CTTGTGAAGT
  GTGCTCTTAG AGTATCACAG CCTTGAAGAG AATTCGTCAG GGGCAGCATC CGAGAGAATG
  AGGCTTTGAG GAAACCACGT TGGAGTTCTT GTACATAAAT AAAAATAAAA ATGAATTTAA
  R
  CGAGGCACGT GATTTTATAT CTTAAAGTTG GTTGTAATCA CTTTAAACAA ACGCTCACGG
  TTGCACTGAG AGGACTGCAG CTCCCATGTG ACCTGTCACT GCCCTTCTGA GGACACACTT
  CCTGACTCCT GTCAGTTTTG CTCAAGTGGC GTATTTCACG TTCCAGGAGC AGTTGGAAAC
  GTCCAGGCGG GAGATGATCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss47027156	NES10841994	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs31200122					SNP	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027156	NES10841994	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146128484 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	1164 bp proximal
Ssx2ip	SSX family member 2 interacting protein	Intron