rs31199889 SNP Detail

Summary

• ID
  rs31199889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146051233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATGCTAG AATGCCAATA
  ACCCTCCCTC CAAGGCCTGA GAAGTCTGGT GAGGAGCGCT TTCTGGGACA TGACAATTTC
  CCAGAACCGC AGCGTGGGGT CGCTGTGGTT CCACCGCTGC CTACGCCTCC GTCTGGCGCC
  TCAGAGAAAG GGCTTCCCTG CTCCTCCTTT GAGCCGCCCT AACAGTCCTG TCTTTAAACC
  R
  CATTTATGAC TATTCTGTGC CGAGACTGTG AAAACCTCTT GGGACAGAGT CACAGTGAAC
  AGCAGCCGGT GACGTTCACA GTCTAGAAAG AGAGATAAGT AAATAAATAG AAACATTAAG
  CTTGTGGTTA GATGTGGATG AAAAGGGAAG GGTGCCATTA GTGATGGAGT CTGCGTTTAT
  ACAAGGTGCG GGAAGATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47026618	NES10845653	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	G	G	G	G		G	A	A		G
ss136043418	ENSMUSSNP2080106	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
ss321010021	CHEV_3_146008442	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31199889					SNP	G	A	G	A	G	G	G	G	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026618	NES10845653	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146051233 () rs orientation: forward

Symbol	Name	Function Class
Gm40167	predicted gene, 40167	956 bp upstream
Rr587008	regulatory region 587008	1439 bp distal
Rr587009	regulatory region 587009	1644 bp distal
Rr587010	regulatory region 587010	within coordinates
Rr587011	regulatory region 587011	60 bp distal