rs31199887 SNP Detail

Summary

• ID
  rs31199887
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146051139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAATGTCT TTCTCTGTGG
  GGAGATGTTC GAGGGCAGAT TTCAAATTTT TTAATTAAGG AAAAGAATAA AGAATCAAGT
  TTAATGGGTT AAGAGCCATG CTAGAATGCC AATAACCCTC CCTCCAAGGC CTGAGAAGTC
  TGGTGAGGAG CGCTTTCTGG GACATGACAA TTTCCCAGAA CCGCAGCGTG GGGTCGCTGT
  K
  GTTCCACCGC TGCCTACGCC TCCGTCTGGC GCCTCAGAGA AAGGGCTTCC CTGCTCCTCC
  TTTGAGCCGC CCTAACAGTC CTGTCTTTAA ACCGCATTTA TGACTATTCT GTGCCGAGAC
  TGTGAAAACC TCTTGGGACA GAGTCACAGT GAACAGCAGC CGGTGACGTT CACAGTCTAG
  AAAGAGAGAT AAGTAAATAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47026616	NES10845651	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T	G	T	G	G	G		T	T	T		G
ss136043415	ENSMUSSNP4798777	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					G
ss321010020	CHEV_3_146008348	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31199887					SNP	G	T	G	T	G	T	G	G	G	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026616	NES10845651	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146051139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	within coordinates
Gm40167	predicted gene, 40167	1050 bp upstream
Rr587008	regulatory region 587008	1345 bp distal
Rr587009	regulatory region 587009	1550 bp distal
Rr587010	regulatory region 587010	within coordinates
Rr587011	regulatory region 587011	13 bp proximal