rs31199885 SNP Detail

Summary

• ID
  rs31199885
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146050945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAATGTTA TTTAACAACT
  TAAAAGGTGA AACAACGTAA ATACAATAAA TCGAAGGAAG GAAAGCTTTA AAAAAAAAAA
  GCAACTGCAG ATGTAAGCAG GAATTTTTAA AGCATAGAAA TCTGAAAATG TAAGATTTCA
  AAATGGTTGC GGGGTTGTTA CCATAGCAAC GCCAGTCTGA GCCACAGCAT GTTTCCAAAT
  R
  TCTTTCTCTG TGGGGAGATG TTCGAGGGCA GATTTCAAAT TTTTTAATTA AGGAAAAGAA
  TAAAGAATCA AGTTTAATGG GTTAAGAGCC ATGCTAGAAT GCCAATAACC CTCCCTCCAA
  GGCCTGAGAA GTCTGGTGAG GAGCGCTTTC TGGGACATGA CAATTTCCCA GAACCGCAGC
  GTGGGGTCGC TGTGGTTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47026614	NES10845649	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31199885					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026614	NES10845649	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146050945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	95 bp proximal
Gm40167	predicted gene, 40167	1244 bp upstream
Rr587008	regulatory region 587008	1151 bp distal
Rr587009	regulatory region 587009	1356 bp distal
Rr587010	regulatory region 587010	within coordinates
Rr587011	regulatory region 587011	207 bp proximal