rs31199785 SNP Detail

Summary

• ID
  rs31199785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157266626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGGTGCTCC CTATGTGTGC TGATGGTGTT GGGGTGTGTG TGTGTGTGTG TGTGTGTGGT
  GGTGGTGGTG GTGGGGGGGG TAGAACAAAG TTGCTTAACA AGTGTGGATA TGCCGGGCGT
  GGTGGCACAC GCCTTTAATC CCAGCACTGG GGAGGCAGAG ACAAGTGGAT TTCTGAGTTC
  GAGGCCAGCC TGGTCTACAA AGTGAGTTCC AGGACAGCCA GGACTATACA GAGAAACCCT
  GTCTTGAAAA ACAAAAACAA AACAAAACAA AAACAAAAAC AAACAAACAA ACAAAAACCC
  Y
  CCAAAACCAA GTGTGGATAT GTTTCTAAGG ACACCAAGGG GGAACTGGGA TGACTTGAGA
  CAAGTTTTAG AGTAGGAGGG GAAGCGGGAC TAGGTGTATT TATATCACCA ACCTGGCAAA
  CATATAAATA TACATGTAAA TAGAAGGGCA TCCCACTCCT GTTACTGAAT AGTCTTCTCT
  GGCTCCTGCC TATGTAGGGA AAGACAGTCA CAGATACAGT ATTTCTATCC TCATAAAGAA
  AAGCTGGCAT CCTGGCAAAT CACCCGGCAG ACTGAACTAT AAATACATTA TTAATCAGAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45007342	mCV22694054	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31199785					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157266626 () rs orientation: forward

Symbol	Name	Function Class
Gm70539	predicted gene, 70539	1568 bp upstream
Gm71050	predicted gene, 71050	within coordinates
Rr421381	regulatory region 421381	714 bp proximal
Rr421382	regulatory region 421382	1495 bp proximal
Rr421383	regulatory region 421383	1579 bp proximal
Tssr9590	transcription start site region 9590	1564 bp upstream